Fixed the README.md and added gitignore

2-heatdiff-analysis/.gitignore

+*checkpoint*
+products*
+secrets*
+parameters*
+*.pyc
+1-heatdiff*

2-heatdiff-analysis/README.md

+# Simulation analysis
+
+The simulation was done dimensionlessly. For a given regime.
+
+The analyse script produces the analysis plots for given physical parameters:
+
+* length of domain: in m
+* thermal diffusion coefficient: in m^2/s
+
+Additionally the time at which center temperature is 99% of the boundary temperature
+is computed. 
+
+# Base environment
+
+This package should base on the `heatdiff-env` package to work properly
+
+# Depedencies
+
+This package requires:
+
+1. a list of `res_{snap_shot}.txt` files representing the evolution of the dimentionless temperature profile. These files should be present in the `1-heatdiff` folder.
+2. a `setup.toml` file with information on the domain and resoltion of the simulation.
+
+# Parameters
+
+The parameters of this package can be found in `parameters/dimensions.toml`. Their description and units are in the comments.
+
+# Products
+
+This package produces a plot of the evolution of temperature at the center of the simulated domain, see: `products/temperature_center_dim.png`

2-heatdiff-analysis/README.txt

-## Analysis
-
-The simulation was done dimensionlessly. For a given regime.
-
-The analyse script produces the analysis plots for given physical parameters:
-* length of domain: in m
-* thermal diffusion coefficient: in m**2/s
-
-Additionally the time at which center temperature is 99% of the boundary temperature
-is computed.